YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|49076898, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.51
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	544	0.94
Transmembrane Helix	545	564	0.88
Cytoplasmic	565	579	0.73
Transmembrane Helix	580	601	0.86
Non-Cytoplasmic	602	637	0.77
Transmembrane Helix	638	661	0.84
Cytoplasmic	662	679	0.70
Transmembrane Helix	680	700	0.89
Non-Cytoplasmic	701	759	0.48
Transmembrane Helix	760	786	0.84
Cytoplasmic	787	803	0.48
Transmembrane Helix	804	824	0.88
Non-Cytoplasmic	825	830	0.48
Transmembrane Helix	831	852	0.92
Cytoplasmic	853	858	0.48
Transmembrane Helix	859	880	0.90
Non-Cytoplasmic	881	899	0.51
Transmembrane Helix	900	930	0.78
Cytoplasmic	931	944	0.46
Transmembrane Helix	945	965	0.90
Non-Cytoplasmic	966	989	0.52
Transmembrane Helix	990	1013	0.91
Cytoplasmic	1014	1015	0.51

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDPPNQQTTG THQIVSSAQD GAAQGISLAF SSRQSTRSEN RKSHGSDQGE LIALQSFAPS  60
   61 DTGAHRLDLP PTLSKLQQRI QSHLEQRGTM KFSHSLQFNA VPDWADKYIA YSNLKKAIYM 120
  121 MEKELPSVPN APYSDVENES SGLLQNADTS ETDRAFVPLL DKELNKIVEF YLEKDTELRA 180
  181 DLQQLKDDLE RTENEDFEDN SDYGMSDDDD DDDALDTVRT AKASTTRRPS IDDVFTHPSK 240
  241 YNEASRQEQR MREGSAPSRS RKDSRATTDD GHPPTRPSNN RNRSSQLLDQ STDSVEIGAD 300
  301 TCDLAKRARS SSNASQTGSK ARWGSIFGKK PVRRRSLGLA RAGDDSASNA QDRLAPGSSD 360
  361 AGDSSYAGGD AKSMSIWTAD NDYAIDMRIT FKKRITDLFV AMSELKQFVQ LNETGMRKIL 420
  421 KKYDKITKSD LKDRYMNDSL RTQQPFTAET KRSLDECIDT LIQLYAKVVT GGDFAAASSS 480
  481 LKTHLREQVV WQRNTVWREM IGIERRAQGA ALERSVMGSS KRNNFQVKKP LRLRTPCGSL 540
  541 TVPSWLSVST VHLVIAFTAL VALLKAPGLR FFHRVEEQNC LAMLVFCTIL WATEVIPLFV 600
  601 TSLMVPLLVV TLRVARTDDV KDRRMTAPET TKWIFSQMFA PNMCLLLGGF TLAAALSKYG 660
  661 IDKILATKIL RLAGTRPSVV LLAHMGVACF ASMWISNVAA PVLMYSLIQP ILRTLPSKSP 720
  721 YASSLIMGIA LASNIGGQTS PIASPQNLIA LQYMKQPVGW LQWFAVTIPV SGLSLVVIWL 780
  781 ILLWSYGAGN GTVIKKLGES RDSFTKIQWF ISAVAMSTIA LWCLEKNFES IVGDMGIIAI 840
  841 IPMVLFFGTG ILTKEDFNTF LWTVVFLAMG GIALGKAVTS SGLLESLDDL IQEIVKELPL 900
  901 WQILVALLSI GLVVATFISH TIAAVLLVPI AAQVGESLEH PHPRLLIMAT TLVASAAMGL 960
  961 PVSGYPNQIA VSMEDDLGDR YVSVKDFLKV GIFASVVATL IVGTIGVVIM YALQF