YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|49079820, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.40
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSAMDEIRKI PPVTRYMLGA TAAITLPCLL VITSPYRFAL FWPLVIRKFH IHRIFTSFFY  60
   61 GGGGLKLLFD VFLLYRNSSD LELNHFGRRT ADYTWSLLVM GVVILATNYP LGSPIYFGPL 120
  121 LNALIYVWAR ANPTSSVSFF GMVNCPSRWL PYVYLGLDLL QGGPGSAITN ATGLLAGYAY 180
  181 WMLDQVLPAQ RGGGGRGGGR GGSYIPTPAF LETILPDSLD PSLQGQNMGI RNARRVAGGI 240
  241 VWNAARDRGH RLSERSSSAT PRPTSIASAL GAGARSTLNS LNPFRGSAGT ASRTNTGPSR 300
  301 QDLLAAAERR LRASQASSIV GRNASERASK PAGSNTPGTT SVNPRPAAER TSNLRKTAAA 360
  361 SSQSNTFSFG QLKAKSNDVH AEDEQDHSSS GGAVAEQRWG TAKGKGKEKA KDESQDEEPS 420
  421 RDAGYSWGSG GQRLGE

Type	Start	End	Confidence
Cytoplasmic	1	15	0.88
Transmembrane Helix	16	36	0.92
Non-Cytoplasmic	37	53	0.76
Transmembrane Helix	54	74	0.89
Cytoplasmic	75	92	0.88
Transmembrane Helix	93	112	0.92
Non-Cytoplasmic	113	132	0.70
Transmembrane Helix	133	147	0.40
Cytoplasmic	148	158	0.35
Transmembrane Helix	159	182	0.73
Non-Cytoplasmic	183	436	0.53