YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|46101793, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.66
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	17	0.84
Transmembrane Helix	18	39	0.72
Non-Cytoplasmic	40	101	0.67
Transmembrane Helix	102	124	0.73
Cytoplasmic	125	144	0.78
Transmembrane Helix	145	167	0.88
Non-Cytoplasmic	168	176	0.75
Transmembrane Helix	177	203	0.78
Cytoplasmic	204	208	0.65
Transmembrane Helix	209	230	0.87
Non-Cytoplasmic	231	263	0.90
Transmembrane Helix	264	288	0.84
Cytoplasmic	289	314	0.92
Transmembrane Helix	315	337	0.66
Non-Cytoplasmic	338	381	0.78
Transmembrane Helix	382	403	0.92
Cytoplasmic	404	489	0.98
Transmembrane Helix	490	513	0.89
Non-Cytoplasmic	514	890	0.99
Transmembrane Helix	891	914	0.93
Cytoplasmic	915	986	0.99
Transmembrane Helix	987	1006	0.95
Non-Cytoplasmic	1007	1025	0.92
Transmembrane Helix	1026	1046	0.93
Cytoplasmic	1047	1062	0.76
Transmembrane Helix	1063	1089	0.84
Non-Cytoplasmic	1090	1117	0.81
Transmembrane Helix	1118	1140	0.89
Cytoplasmic	1141	1155	0.82
Transmembrane Helix	1156	1176	0.86
Non-Cytoplasmic	1177	1186	0.67

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSVSSMAWL RRVCLDDYGY NFALPALTIV SAVLSEAVIR RVSFTEIDFQ TYLGQAALYL  60
   61 DGERDYSNLD PPGGSGPCVY PAAHIYLYSF FHWLTHAGGN ILPAQHVFAA TLTANNLLVA 120
  121 MLYRQAGMPP LAVLPLILSK RIYSIFLLRM FNDPIAVLFV YLALFAATNS RWKLSALLFS 180
  181 FGLGIKMNVL LFLPGFAAAA FVYTGIRGAI SYIAVVIVVQ ALLSAPFTLH DPHAYLTRAF 240
  241 DFSRSFLHVW TVNWRFVPED TFLSQHFACG LLSLHIVLLT LFGLFRWTGI ASHGPKWILQ 300
  301 NLSARSHKLV QSEKTALMCC AFTSNTIGIL CSRSLHYQFY SWYFHQVPLL LWLSQLPNIV 360
  361 KLILPVVLEW CWNVFPSTDT SSLLLLACHV VLVLGCFTMP GLVTAKRPLS SIAQDDDGAE 420
  421 VEALLLTDDL RLSKPSEPDS KTASTSNDPA DVREEALLRL AQARKAKAAK EAKLRDAFRR 480
  481 RIATRRRVLA LLGKLLLLLR PILVLASIVL ILVLPHPQSP VSKGTYVDEN ALQPGQARVY 540
  541 WDYFDVTYAD MLSEKVSFLK DASSAERADF VFRELQSYGL EVNRQHYKYD SIPLHHGSAL 600
  601 SGINVYARSA TPRIDGREAI ILTASWRSRW QGADDPFPPA ENLDETVSID QRGRINVRGV 660
  661 ASILALARYL TTQAHLSKDL IFVISDGHLE GIHAWSSAYF GSKSEGLQVD PVSAGGSQVW 720
  721 NAISIDYPSD SFSSLEVQYE GFDGQLPNMD VVNTIVRIAD TVTGGMPLTF GLRSAPLHLK 780
  781 EPVQRLAQKW GIRLRSDVEY ELGNYENGVR AALRQVGFGV TGRASGPHGF FQRHHVDAIT 840
  841 LYAVPATGPY GFFHMGRLVE SFVRSMSNLL ERLHHSQFFY LLLNPRRFVP IGTAILVPLL 900
  901 LSISLTISGL ALWFAEEKVS KQEREAIFSG LDPSAGDDGD MQPETPTMSW YRNQIVQNHF 960
  961 TAVEGEDAAD RKTNEYGVAL RESMRPIATT LACVGLTVLA GVGVLLRNDL LFAEMSGGLT1020
 1021 KRGKQLGAAR VVIMLLPIAG AVLLRSRCGI KRAHRIGSLL IAFAYLQAGM LVAVLSVLNF1080
 1081 ALAAFLALLT YSALRIASGR PSSSPLTEAV PAHSWVNFIR GLAVMVFSPV FWAALLLQFL1140
 1141 RRETLQHEVS ALVLHWKLYN AATVPILCVA YLPIVLQAQL GAFLRV