YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|15028307, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.67
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MATNGSSEHL LPETTRPSAI INKQQPEFPA SRFTFMSLVL WFDQSNFGTA LLSWSVFFLL  60
   61 VVIVPLISHF LLVCSDCDFH HRRPYDVIVQ LSLSIFAGIS FVSLSIWSRK FGMRRFLFLD 120
  121 KLWDVSDKVR IEYEAEIQRS LKRLMIFVLP SLTLEATYRI WWYISGFNQI PYIINPILSH 180
  181 VVACTLQLSS WLYRNSLFII VCILYKITCH LQTLRLDDFA RCFASEITDV RSALGEHQKI 240
  241 RRNLRIVSHR FRRFILLSLI LVTATQFMAL LTTTRASVAV NIYEVGELAL CSLSLVTGVF 300
  301 ICLRSATKIT HKAQSVTSLA AKWNVCATVD SFDHLDGETP TGSIIESQVS LRGNAIETSD 360
  361 DEEGEGDDDL DNTKIHPIYA NTISYQKRQA LVTYLENNKA GITVYGFLVD RSWLNTIFGI 420
  421 ELALLLWLLN KTIVNIP

Type	Start	End	Confidence
Cytoplasmic	1	49	0.93
Transmembrane Helix	50	72	0.88
Non-Cytoplasmic	73	86	0.91
Transmembrane Helix	87	108	0.92
Cytoplasmic	109	143	0.93
Transmembrane Helix	144	162	0.85
Non-Cytoplasmic	163	171	0.72
Transmembrane Helix	172	193	0.67
Cytoplasmic	194	250	0.90
Transmembrane Helix	251	273	0.88
Non-Cytoplasmic	274	284	0.75
Transmembrane Helix	285	303	0.93
Cytoplasmic	304	437	0.85