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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|194239406, gi...
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.81
Topology Confidence: 0.78
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRRKRYVWLK SILVAILVFG SGVWINTSNG TNAQAATITQ DTPINQIFTD TALAEKMKTV  60
   61 LGKTNVTDTV SQTDLDQVTT LQADRLGIKS IDGLEYLNNL TQINFSNNQL TDITPLKDLT 120
  121 KLVDILMNNN QIADITPLAN LTNLTGLTLF NNQITDIDPL KNLTNLNRLE LSSNTISDIS 180
  181 ALSGLTSLQQ LSFGNQVTDL KPLANLTTLE RLDISSNKVS DISVLAKLTN LESLIATNNQ 240
  241 ISDITPLGIL TNLDELSLNG NQLKDIGTLA SLTNLTDLDL ANNQISNLAP LSGLTKLTEL 300
  301 KLGANQISNI SPLAGLTALT NLELNENQLE DISPISNLKN LTYLTLYFNN ISDISPVSSL 360
  361 TKLQRLFFYN NKVSDVSSLA NLTNINWLSA GHNQISDLTP LANLTRITQL GLNDQEWTNP 420
  421 PVNYKVNVSI PNTVKNVTGA LIAPATISDG GSYAEPDITW NLPSYTNEVS YTFNQSVTIG 480
  481 KGTTTFSGTV TQPLKAIFNA KFHVDGKETT KEVEAGNLLT EPAKPVKEGY TFIGWFDAQT 540
  541 GGTNWNFSTD KMPTNDIDLY AQFSINSYTA TLDNDGVTTS QTVDYQGLLQ EPTAPTKEGY 600
  601 TFKGWYDAKT GGDKWDFATS KMPAKNITLY AQYSANSYTA TFDVDGKTTT QAVDYQGLLK 660
  661 EPKTPTKAGY AFKGWYDEKT DGKKWDFATD KMPANDITLY AQFTKNPVAP PTTGGNTPPT 720
  721 TNNGGNTTPP SANIPGSNTS TGNSASTTST MNAYDPYNSK EASLPTTGDS YNALYLLIGL 780
  781 LAVGTAVALT KKARASK

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle