YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|225877405, gi...
Protein type:	Transmembrane
Type Confidence:	0.81
Topology Confidence:	0.75
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDEKTKIYDI TIIGGGPVGL FAAFYAGMRN ASVKIIESLP QLGGQLSTLY PEKYIYDIPG  60
   61 YPAVRAQELV NNLIQQMKPF DPTIALEEAV QSVEKQVDGT FEIITKKDTH YSKAVIITAG 120
  121 NGAFEPRRLD LPEAEQYEGK NIHYFINDLS RFSGRRVAVC GGGDSAVDWA LMLEKVASSV 180
  181 AIVHRRNAFR AHEHSVNNLE KSSIAIKTPF IPTEVLGNGD KLTHITLQEV KGDTRETLEI 240
  241 DDFIINYGFV SSLGPIKNWG LELERNSIVV NSKMETSIPG IYCAGDICTY DGKVKLIATG 300
  301 FGEAPTAVNN AMNFIDPKTR VQPMHSTSLF E

Type	Start	End	Confidence
Cytoplasmic	1	6	0.76
Transmembrane Helix	7	28	0.75
Non-Cytoplasmic	29	331	0.95