YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|47017561, gi\|...
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.99
Topology Confidence:	0.88
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Signal Peptide	1	28	0.96
N-region	1	19
H-region	20	25
C-region	26	28
Cleavage Site	28	29
Non-Cytoplasmic	29	149	0.99
Transmembrane Helix	150	170	0.95
Cytoplasmic	171	186	0.94
Transmembrane Helix	187	209	0.88
Non-Cytoplasmic	210	233	0.89
Transmembrane Helix	234	254	0.93
Cytoplasmic	255	259	0.88
Transmembrane Helix	260	278	0.93
Non-Cytoplasmic	279	298	0.87
Transmembrane Helix	299	319	0.94
Cytoplasmic	320	328	0.84
Transmembrane Helix	329	352	0.90
Non-Cytoplasmic	353	368	0.92
Transmembrane Helix	369	391	0.94
Cytoplasmic	392	401	0.86
Transmembrane Helix	402	421	0.93
Non-Cytoplasmic	422	541	0.98

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKLLKRVSFF LIILYLLIVP VQHVSAHAYL ENSNPADQSH IQTAPEKVTL VFNEEIEADF  60
   61 PLIEVKDSSG KQVETGKTTV SKKNNHMVEA SLPADLKADV YSVSWRVVSA DGHAVTGIIS 120
  121 FKLGDTKATF QAAEVPSSGA DLQISSIQKA VLYIGFSLFI GVLLFGLGLY PRKEQLTEKI 180
  181 SGRLKKVTWV ALALLGVALF MQLFIQTSIT TGVSISESFG PSKLVAFLTT KTGYIWISEL 240
  241 IVWLLLAIFT IMMFFKKKQW SWFALLTESA LIGYLIFAKA QNGHAAASAD KIVSISADML 300
  301 HMIAASVWVG GILVLLFVLP QTGKARAVWS RFAIVAIIAV ASILVSGLLM AVMNLGQMAN 360
  361 LFTTNYGKIL LFKIGLFLLM ALLGLGHYIY IKLKNQRLPF KTILMELIIG TIILVVASVL 420
  421 TNVQTPPPPA PKAFDETIAA EGEKAKINLR VEPATVGQNQ FIITFTSADG SAKTDFEQVT 480
  481 ITTKSTKTDE KSTFQAKLAN DTQYFAEGLY INQTGKWEIT VHGLTKDFTD INQTFTTNIT 540
  541 Q