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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|254937992, gi...
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.73
Topology Confidence: 0.66
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRRKRYVWLK SILVAILVFG SGVWINTSNG TNAQAATITQ DTPINQIFTD AALAEKMKTV  60
   61 LGKTNVTDTV SQTDLDQVTT LQADRLGIKS IDGVEYLNNL TQINFSNNQL TDITPLKNLT 120
  121 KLVDILMNNN QIADITPLAN LTNLTGLTLF NNQITDLDPL KNLTNLNRLE LSSNTISDIS 180
  181 ALSGLTSLQQ LSFGNQVTDL KPLANLTTLE RLDISSNKVS DISVLAKLTN LESLIATNNQ 240
  241 ISDITPLGIL TNLDELSLNG NQLKDIGTLA SLTNLTDLDL ANNQISNLAP LSGLTKLTEL 300
  301 KLGANQISNI SPLAGLTALT NLELNENQLE DISPISNLKN LTYLTLYFNN ISDISPVSSL 360
  361 TKLQRLFFYN NKVSDVSSLA NLTNINWLSA GHNQISDLTP LANLTRITQL GLNDQAWTNA 420
  421 PVNYKANVSI PNTVKNVTGA LIAPATISDG GSYTEPDITW NLPSYTNEVS YTFSQPVTIG 480
  481 KGTTTFSGTV TQPLKAIFNA KFHVDGKETT KEVEAGNLLT EPAKPVKEGH TFVGWFDAQT 540
  541 GGTKWNFSTD KMPTNDIDLY AQFSINSYTA TFENDGVTTS QTVDYQGLLQ EPTPPTKEGY 600
  601 TFKGWYDAKT GGDKWDFATS KMPAKNITLY AQYSANSYTA TFDVDGKSTT QAVDYQGLLK 660
  661 EPKAPTKAGY TFKGWYDEKT DGKKWDFATD KMPANDITLY AQFTKNPVAP PTTGGNTPPT 720
  721 TNNGGNTTPP SANIPGSDTS NTSTGNSAST TSTMNAYDPY NSKDASLPTT GDSDNALYLL 780
  781 LGLLAVGTAM ALTKKARASK 

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle