YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|8050874
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.53
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAAAILDKVN FGIDQPFGIK LDTYFAQAYE LVTGKSIDSF VFQEGVTPLS TQREVAMWTI  60
   61 TYFVVIFGGR QIMKSQDAFK LKPLFILHNF LLTIASGSLL LLFIENLVPI LARNGLFYAI 120
  121 CDDGAWTQRL ELLYYLNYLV KYWELADTVF LVLKKKPLEF LHYFHHSMTM VLCFVQLGGY 180
  181 TSVSWVPITL NLTVHVFMYY YYMRSAAGVR IWWKQYLTTL QIVQFVLDLG FIYFCAYTYF 240
  241 AFTYFPWAPN VGKCAGTEGA ALFGCGLLSS YLLLFINFYR ITYNAKAKAA KERGSNFTPK 300
  301 TVKSGGSPKK PSKSKHI

Type	Start	End	Confidence
Cytoplasmic	1	83	0.53
Transmembrane Helix	84	107	0.85
Non-Cytoplasmic	108	176	0.58
Transmembrane Helix	177	203	0.77
Cytoplasmic	204	221	0.81
Transmembrane Helix	222	241	0.93
Non-Cytoplasmic	242	258	0.85
Transmembrane Helix	259	279	0.94
Cytoplasmic	280	317	0.96