YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|228985404, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.69
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDTLSHKEAD KGAIVSILAY IFLSSMKIII SYITLSSALR ADGLNNLTDI GASLAILIGL  60
   61 KISRKPRDPD HPYGHSRAEQ IASLVASFIM ATVGLEVVIS AIQSFLNPKQ AAPNVLAAWV 120
  121 ALFSAVVMYC VYLYTKKIAA RTRSKSLEAA AKDNLSDALV SIGTVVGIVG SQFQMPILDP 180
  181 IAALIVGLII CKTAWEIFVE ASHMLTDGID PDKMEEYADA IEHIGGVENI VDIRARMYGN 240
  241 QTYVDITIEV DARMDVGESH CITDNIEAML RKKFGIYHAH IHVEPMEKEP IMT

Type	Start	End	Confidence
Cytoplasmic	1	12	0.93
Transmembrane Helix	13	35	0.88
Non-Cytoplasmic	36	42	0.78
Transmembrane Helix	43	63	0.84
Cytoplasmic	64	80	0.96
Transmembrane Helix	81	103	0.91
Non-Cytoplasmic	104	114	0.79
Transmembrane Helix	115	135	0.94
Cytoplasmic	136	153	0.95
Transmembrane Helix	154	173	0.77
Non-Cytoplasmic	174	179	0.57
Transmembrane Helix	180	199	0.69
Cytoplasmic	200	293	0.87