YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|47556460, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.83
Topology Confidence:	0.61
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	28	0.61
Transmembrane Helix	29	51	0.90
Cytoplasmic	52	61	0.91
Transmembrane Helix	62	84	0.90
Non-Cytoplasmic	85	104	0.93
Transmembrane Helix	105	127	0.89
Cytoplasmic	128	134	0.95
Transmembrane Helix	135	157	0.90
Non-Cytoplasmic	158	182	0.89
Transmembrane Helix	183	202	0.93
Cytoplasmic	203	215	0.84
Transmembrane Helix	216	236	0.94
Non-Cytoplasmic	237	268	0.93
Transmembrane Helix	269	294	0.88
Cytoplasmic	295	304	0.76
Transmembrane Helix	305	326	0.87
Non-Cytoplasmic	327	329	0.59
Transmembrane Helix	330	350	0.89
Cytoplasmic	351	357	0.83
Transmembrane Helix	358	378	0.91
Non-Cytoplasmic	379	398	0.90
Transmembrane Helix	399	417	0.96
Cytoplasmic	418	430	0.91

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLFALFLGAG NLIFPPVLGQ QAGENVWVAT IGFLVTGVGL PLLAVTAVAF VEGDLKALSS  60
   61 RVHPIFAFVF PLISYLAIGP FFAIPRTGAV SFEMGMKPFL SETLVSEWYM LFLFTIIFFG 120
  121 ITWYLSLNPS KLVDWFGKFL TPLLVLIVAV IVGKAIVDPI GEPAAPLAAY KENAFFGGFI 180
  181 QGYLTMDAIS ALVFGIVVVQ VIRSKGIKES NQIAKITVVS GIIAVLGLTL IYLSLAYLGS 240
  241 TSTSLGVSEN GGLILTNVVN ELYGTSGKIL LGLVIILACL TTSVGLTSAC AGFFTNLFPK 300
  301 LSHKTIVTMV CVFSLIVSNL GLTQLIAVTL PVLMIIYPVA IVLIVLSYFH KWIGKRNTIY 360
  361 IGAILGALLI SFFNGLESAK IKIDAISNVL QMLPLYNEGI GWLIPSCIGG ILGFFFYKSN 420
  421 ESSELQKKGA