YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|47558072, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.58
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFRLTSKKKK QTVCSVPEFI HAMKESSDFS SSNVIEDGTL CLFYYKSTVE SLIIKRFILA  60
   61 PIKDKLDEIQ HIDDILNIVS IEDIIISPSI DEIREKLLGG YVLLQLKKGS EQEAYALLRA 120
  121 ESTVLGTRLV NDTENEYSVI GPKVGFVENV DINIHLLRRN IVTEQLIFKE VSVGSMSKTK 180
  181 IVVAYIEGIT NEQHINTATQ RLQDIDFDYP FDATMIEQFI SDNSNSPFPV LLPTERLDRS 240
  241 VYALLNGGVV ILTDGSPYAL AGPATLLDFF VSPEDYYLPW MAGSFLRLVR FFGAAFSLFS 300
  301 SAIYTAVLTY HYQMIPADLL GPIIYSRANV PFPPVLEALF LEITIELLRE AGARLPTKVG 360
  361 QTIGIVGGIV IGQASVEAAL TSTILLIAVA LSALASFTTP TVKMSSTIRI LRFPLIILAG 420
  421 AFGGVGLIVG FVFILAHLIR LKSLGSPYLL PLYPFRGLGT AEGLLRLPFS QTAGRASFLR 480
  481 PKKKWRYDPN KAKEKRDGEE K

Type	Start	End	Confidence
Cytoplasmic	1	287	0.83
Transmembrane Helix	288	310	0.89
Non-Cytoplasmic	311	377	0.44
Transmembrane Helix	378	402	0.81
Cytoplasmic	403	414	0.78
Transmembrane Helix	415	437	0.94
Non-Cytoplasmic	438	501	0.58