YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|47555307, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.80
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	17	0.96
Transmembrane Helix	18	38	0.91
Non-Cytoplasmic	39	56	0.93
Transmembrane Helix	57	79	0.88
Cytoplasmic	80	105	0.95
Transmembrane Helix	106	131	0.84
Non-Cytoplasmic	132	151	0.89
Transmembrane Helix	152	176	0.85
Cytoplasmic	177	196	0.94
Transmembrane Helix	197	217	0.94
Non-Cytoplasmic	218	230	0.79
Transmembrane Helix	231	254	0.92
Cytoplasmic	255	286	0.93
Transmembrane Helix	287	308	0.80
Non-Cytoplasmic	309	516	0.90
Transmembrane Helix	517	540	0.90
Cytoplasmic	541	573	0.91
Transmembrane Helix	574	592	0.95
Non-Cytoplasmic	593	603	0.74
Transmembrane Helix	604	626	0.91
Cytoplasmic	627	637	0.91

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTLSSIALRN IQRNFKDYFV YFASMIFSIV IYFTFKALQY NSQMEKAAEA SKKISGAFQV  60
   61 SSVMLIIFVA VFIIYSNGFF TRKRKKEVGL YSLLGIRKRQ IGKMLFYENM LMGLMSLVIG 120
  121 IAIGSVLSKL FLELLVNMMG LNLNVHFEVP MAAIIDTAII FFVIILYTSL QGYRLIYRFK 180
  181 LIELFRAERE GETMPKGSVI MALISVFLIG SGYFLALMYM KAVMYADFMV VALYILLATV 240
  241 AGTYLLFMFF TVFVLKRARN NKSAFYNGMN MVTTSQLLYR IKGNAKSLAT IAILSAVTLT 300
  301 AVGTKVAAPY SYSYEKKDAA LDKKVNEILA GEKNNHPVTY ESEVEMIPVK GTFKGERADQ 360
  361 VLNTHYNVTN QYQLISQSSF NKHVKHLDVE PVNLSANEAF VYDSLYIEKL DFGPLYTGNT 420
  421 AVIPVGNESK ELKIKGVNNR SLTNLNELFV IVPDKTYEQV KQVNKTRTVK NIDVKGERNS 480
  481 KELTAKLASI MPAGESEVLK PFNDFYTGFQ MGLETTGLMM FIGLFLGLVF LLATGSIIYF 540
  541 KQLTEASADR DRYIVLHKVG VTKQEMKKAI AKQVSFIFAI PLVIGILHSL FALKGLSNIL 600
  601 PFEIMIPLLI SIGVYGVIYI GYYFLTVRSY YKIVSAK