YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|47568102, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.77
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKRISIQLGF YFLIVTLLIE SVLFVSLYYS LVNNRVNEEM TALLKRGNSH RDVLEKYFDK  60
   61 QTISHVALME SEAETTVVIT NANKDVLAKS NEINTTIKRH IEKMQTRTDH DGAIIENHWK 120
  121 TSNYICTVSP IIVAGKTEGY VYMFLGTASI EEMVNGLTRQ FIIAGVITFL LTAITIFLLS 180
  181 RLLTKPLLHM KHATEKMSKG DLSVSLTTTR NDEIGELASS IQTLANDLHY MKTERSEFLA 240
  241 SVAHELRTPL TYVRGYADIA SKEATSPEQR LRYLSIIKDE SDYITNLVQD LFSLAQMEQH 300
  301 NFSIQVKEVH LHTFLTRICE KVNAMYKERY ITVSFSCPPK LLVNLDEQRF EQVVVNILNN 360
  361 AYRHSKEHSH INISVTEEHK HISIAIEDEG EGIPLEDLPH IFERFYRVDK ARSRATGGTG 420
  421 LGLSIVKEIV ELHGGTITVT SEVNHGSCFI ISLPSVKKHD YHQ

Type	Start	End	Confidence
Cytoplasmic	1	7	0.81
Transmembrane Helix	8	31	0.89
Non-Cytoplasmic	32	160	0.82
Transmembrane Helix	161	183	0.87
Cytoplasmic	184	463	0.77