YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|47568262, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.85
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKNKINLQMQ NISFVLIIAL AVWLKTYLIT RFSFDLKIES STQELILFIS PLAASLAFVG  60
   61 FALFATGEKR NYIALCINFL LTIVLVGNVM FYDFYSDFVT LPVLGQTSNF GQLGGSIIEI 120
  121 LNYKIILAFV DIIFFFILLK KKALVFQTGR VTHSARLLYF LLTFGVFFVN LHLAEKERPE 180
  181 LLTRSFDRVM LVKNLGLYTH QVYDLTLQVK AGSQKALADS SKLQETENYV KANESEPHPN 240
  241 MFGVAKGKNV IVVTLESLQT FLIGATVNGQ EVTPFLNKFI NESYYFDNFF HQTGQGKTSD 300
  301 SEFLIDTSLY PLNRGAVFFT HGNNDYTATP EILRQQGYFT SVFHANNATF WNRNIMYSAL 360
  361 GYDRYYNELD YKITPETNLN WGLKDIEYFD QSVDILKTVN QPFYARFLTL TNHYPFTYDE 420
  421 DTKFIEPYNS GNGVFDRYIV TARYLDESIK KFIERLKAEG MYNDSIIVLY GDHYGISEKH 480
  481 NRAMAQFLEK DQITEFDTLN LQRTPLYIHV PGQTEGQMIS KPTGQIDMKP TILNLLGIDT 540
  541 TNDIRFGHDM FSDEYTGFVV LRDGSFITDK YAYKNNTFYD RITGEIVDLP KKEAQALINR 600
  601 AQNELRMSDK IIEGDLLRFS ESNKIKTGEV QTKIKETEK

Type	Start	End	Confidence
Cytoplasmic	1	10	0.85
Transmembrane Helix	11	29	0.93
Non-Cytoplasmic	30	44	0.90
Transmembrane Helix	45	65	0.95
Cytoplasmic	66	72	0.83
Transmembrane Helix	73	95	0.89
Non-Cytoplasmic	96	119	0.92
Transmembrane Helix	120	139	0.94
Cytoplasmic	140	154	0.92
Transmembrane Helix	155	174	0.94
Non-Cytoplasmic	175	639	0.99