YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|47555097, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.84
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNLYIASEKI KIRHTFLNKL IWLVPFATIL IAFLLSADYF QLSSYNWWYI TMLPGMVSLS  60
   61 CVLLAEKDKK MNNRSILSLP VSLKRVWISK VLLILGILSF SCILFFCGIE LSSLLVNKEN 120
  121 FRIIPTVNAL LGSVLLIVTF MWQIPICLFL GNKIGLFPTL LLNVGANGIF GVVLATKNIW 180
  181 MISPYTYPSR LMIPILKILP NGLYAETGSV TFKPELLSYD AILPGIVISV VLFLLFTYVT 240
  241 AKWFEKQEAK

Type	Start	End	Confidence
Cytoplasmic	1	19	0.91
Transmembrane Helix	20	37	0.97
Non-Cytoplasmic	38	46	0.71
Transmembrane Helix	47	65	0.98
Cytoplasmic	66	85	0.97
Transmembrane Helix	86	109	0.92
Non-Cytoplasmic	110	125	0.82
Transmembrane Helix	126	146	0.88
Cytoplasmic	147	155	0.69
Transmembrane Helix	156	179	0.84
Non-Cytoplasmic	180	220	0.93
Transmembrane Helix	221	241	0.93
Cytoplasmic	242	250	0.91