YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|47569321, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.78
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	11	0.80
Transmembrane Helix	12	38	0.91
Cytoplasmic	39	45	0.88
Transmembrane Helix	46	64	0.93
Non-Cytoplasmic	65	226	0.95
Transmembrane Helix	227	251	0.90
Cytoplasmic	252	258	0.82
Transmembrane Helix	259	277	0.89
Non-Cytoplasmic	278	283	0.52
Transmembrane Helix	284	304	0.78
Cytoplasmic	305	319	0.56
Transmembrane Helix	320	344	0.82
Non-Cytoplasmic	345	355	0.67
Transmembrane Helix	356	376	0.87
Cytoplasmic	377	385	0.58
Transmembrane Helix	386	412	0.85
Non-Cytoplasmic	413	446	0.75
Transmembrane Helix	447	467	0.93
Cytoplasmic	468	474	0.93
Transmembrane Helix	475	494	0.97
Non-Cytoplasmic	495	773	0.99

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQGQWGYVAI SFIIGIAIAF SSSVVLLTCC LVVYVFFCLY RTSRKTFFYC MIACFSGAMY  60
   61 TAYVQGQNKP LGESYEATRG VIHTTPLING DRLSFQVEDQ NKNIVQLSYK MKSASEKKQM 120
  121 RQLHAGVSCV FEGERKEPQI ARNFHGFNYR DYLYKQNIHF ILEATYISEC RKTSLSFVQW 180
  181 ILLLRQQAIS GVTEMFPEQS GAFMNALVFG DRHQMTFEVE EQYQQFGLVH LLAISGSHIV 240
  241 LLMVIVYFIL LRSGVTREGA TVCLIFCIPL YMILAGASPS VIRASITGVL MLIAFMCSIR 300
  301 LSSLDALSIT AICMLIFDPY LVFNIGFQFS FVGSFALLLS APLLLESGNG VIRNSIYISL 360
  361 ISQLVSTPIL LYHFGYFSPY SIFLNILYVP FLSLIVLPCS IVILICIPII PFLAKRLADV 420
  421 LSIGLNLSND FLIYCESLPF TRLNFGQTSI LLVALYCVSI VSILMVWERR MSKRIMFIAS 480
  481 GIFLFICTCH YVYPYFRESG SVTFLDVGQG DAILIRLPYD QEIYLIDTGG TIRPNKEEWQ 540
  541 RKKHEFSVGN DILIPYLQKE GIKKIDKLIV THGDADHIGA AQELLSNITV KEVVFGRKKK 600
  601 DAVLEKIVKK QALEKEVKIR EVGEGESWSV NETEFFVLAP TGKEGSENNA SIVMLAKLGG 660
  661 LTWLFTGDLE EEGEKFLVAA YPDLRANVLK VAHHGSNTSS ITPFLSAVQP NIAIVSVGER 720
  721 NRYGHPHKEV IERFEKMGIE IWRTDKQGAI SYVFKGENGT FRSKITYDET HNR