YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|47570746, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.81
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDMHYTSLNL KKEVNCLVVY ADVVWLLNAC IDFLLLLLTA TVLKKKIKRW RLVLGAFIGS  60
   61 TIVIFAFTPF ASMMTHPIMK LLYSLLIVYT AFGFTTFRNY AQTVFTFYFV TFMVGGGLMG 120
  121 THFFFQTNEM VNGLVQSQSI SYGDPISWLF VIFGFPVIYY FSKKRIESVE VTKIHYDQIV 180
  181 KLKIQLAEEE LELTGLIDSG NQLYDPLTKT PVMIMHISSL EHCLPAWLTE QIYSKTEIPQ 240
  241 IPENDSGWAT KLRLIPFRAV GVENQFLWAI KPESVQIYHE GSSIVVNKVL IGLNTQPVVN 300
  301 QWRVSMYCAS KNV

Type	Start	End	Confidence
Non-Cytoplasmic	1	20	0.83
Transmembrane Helix	21	42	0.81
Cytoplasmic	43	49	0.91
Transmembrane Helix	50	71	0.91
Non-Cytoplasmic	72	77	0.78
Transmembrane Helix	78	97	0.92
Cytoplasmic	98	103	0.86
Transmembrane Helix	104	125	0.93
Non-Cytoplasmic	126	144	0.85
Transmembrane Helix	145	162	0.93
Cytoplasmic	163	313	0.98