YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|48730799, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.88
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MWSLVSNASI VVQLVMLTLV AASVTSWIMI FQRSNLIRAG RRALESFEER FWSGIDLSKL  60
   61 YRQAGSNPDP DSGVEQIFRA GFKEFSRLRQ QPGVDPEAVM EGVARAMRVA ISREEEKLEQ 120
  121 SLPFLATVGS VSPYIGLFGT VWGIMNSFRG LASAQQATLA TVAPGIAEAL IATAIGLFAA 180
  181 IPAVIAYNRF SARSETLLSR YYTFADEFQA ILHRKVHTSE E

Type	Start	End	Confidence
Non-Cytoplasmic	1	9	0.88
Transmembrane Helix	10	31	0.94
Cytoplasmic	32	121	0.97
Transmembrane Helix	122	144	0.90
Non-Cytoplasmic	145	165	0.85
Transmembrane Helix	166	187	0.90
Cytoplasmic	188	221	0.94