YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|48731217, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.80
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKQNSLKGWF KSGAPGVWIS GGAVSIAVIM TIGLLAVIAV RGLGHFWPAD LIHASYDVPG  60
   61 QGQHLVVGEV VQKEEVPRAR LKSAGLPVPD EGPEFMTREL IKVGNRDLNG NDFTWIVGEW 120
  121 LTDQKNPPEL MALERREWGN FYGYLVNVKQ DGKVIAEGEA AWPELQARID RVNKLAAQLK 180
  181 TLEKVDIGAI NAGLERIRLH GRKLELEGKL DATAQADMES ERAELNARYQ DIEARLADLH 240
  241 AQFNRDALTA RDANGKEIEI GLGKVVHAYQ PNAMGTFTKI GFYFSKVWEF LSDDPREANT 300
  301 EGGIFPAIFG TVMMTLIMAM IVTPFGVLAA VYLREYAKQN TLTRVIRIAV NNLAGVPAIV 360
  361 YGVFGLGFFV YVLGGSLDRL FFPEALPAPT FGTPGLLWAS LTLALLAVPV VIVATEEGLA 420
  421 RIPRTVREGS LALGATKAET LWKIVLPMAS PAMMTGMILA VARAAGEVAP LMLVGVVKLA 480
  481 PSLPVDGNYP YLHLDQKIMH LGFHIYDVGF QSPNVEAARP LVYATALLLV LVIATLNLSA 540
  541 VYIRNHLREK YKALDS

Type	Start	End	Confidence
Cytoplasmic	1	15	0.80
Transmembrane Helix	16	39	0.90
Non-Cytoplasmic	40	306	0.85
Transmembrane Helix	307	332	0.88
Cytoplasmic	333	349	0.91
Transmembrane Helix	350	373	0.90
Non-Cytoplasmic	374	394	0.90
Transmembrane Helix	395	415	0.93
Cytoplasmic	416	443	0.88
Transmembrane Helix	444	465	0.82
Non-Cytoplasmic	466	520	0.93
Transmembrane Helix	521	543	0.92
Cytoplasmic	544	556	0.96