YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|91689601, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.43
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAEESDLEKT ESATPRRLQK AREEGQIVRS RELSTFALLA AGFFGVWGMS GSIGEHLQGM  60
   61 LRAAFTFDHA GAFETRRMLI GAGVASREGL YALLPILAFT GAAALFAPMA LGGWQLSSKG 120
  121 LEPKFDRLNP IAGLGKMFSI NGPIQLGLSL VKTLVVGVIG GTAIWNRREE ILALATQPLQ 180
  181 LALANTVHLI AVCCGMTVAG MFVVAALDVP YQLWQFHKKL RMSKEEVKRE HRESEGDPHV 240
  241 KGRIRQQQRA IARRRMMTNV PKADVVVTNP THFAVALQYT DGEMRAPKVV AKGVNLVAAR 300
  301 IREIAAENNV PLLEAPPLAR ALYHNVELNR EIPGPLYGAV AEVLAWVYQL RRFKTEGGAV 360
  361 PMAPTELDVP AELDKGGISD DEADQEAADT LNPAMNPDND ASGASA

Type	Start	End	Confidence
Cytoplasmic	1	32	0.84
Transmembrane Helix	33	53	0.83
Non-Cytoplasmic	54	60	0.57
Transmembrane Helix	61	80	0.43
Cytoplasmic	81	89	0.58
Transmembrane Helix	90	111	0.91
Non-Cytoplasmic	112	143	0.62
Transmembrane Helix	144	165	0.85
Cytoplasmic	166	185	0.63
Transmembrane Helix	186	207	0.94
Non-Cytoplasmic	208	406	0.69