YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|50878358, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.50
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	28	0.96
Transmembrane Helix	29	50	0.92
Cytoplasmic	51	59	0.86
Transmembrane Helix	60	81	0.88
Non-Cytoplasmic	82	90	0.87
Transmembrane Helix	91	111	0.90
Cytoplasmic	112	121	0.79
Transmembrane Helix	122	146	0.86
Non-Cytoplasmic	147	158	0.83
Transmembrane Helix	159	180	0.91
Cytoplasmic	181	193	0.89
Transmembrane Helix	194	215	0.89
Non-Cytoplasmic	216	221	0.79
Transmembrane Helix	222	242	0.92
Cytoplasmic	243	261	0.87
Transmembrane Helix	262	287	0.85
Non-Cytoplasmic	288	312	0.75
Transmembrane Helix	313	333	0.53
Cytoplasmic	334	340	0.47
Transmembrane Helix	341	366	0.85
Non-Cytoplasmic	367	404	0.43
Transmembrane Helix	405	427	0.87
Cytoplasmic	428	790	0.50

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAPEAAAAAL KPMKATSDGV FQGEDPLEAA LPLAIVQICI VVVLTRVLAF FLRPLRQPRV  60
   61 IAEIIGGIML GPSAIGRNSA FINTVFPKQS LTVLDTLANI GLLFFLFLVG LELDLRAIRR 120
  121 TGAGALAIAV AGISLPFVLG IGTSVVLQNT VNRGVPTGPF LVFMGVALSI TAFPVLARIL 180
  181 AELKLLTTDL GRMAMSAAAV NDVAAWILLA LAIALSGSGS PFVSLWVLLS GVGFVLSSFF 240
  241 FIRPLLSWMA RRSPEGEPVK ELYICTTLTI VLAAGFITDT IGIHALFGAF IVGIIVPKEG 300
  301 PFAGVLLEKV EDLISGLFLP LYFVSSGLKT NVLTIKGGDS WGLLVLVVAT ACIGKIGGTV 360
  361 LASLIVRVPL REAVTLGVLM NTKGLVELIV LNIGKDRHVL NDETFAILVL MALINTFITT 420
  421 PLVMAIYKPA RRAPPYKNRA VQRPNPDDEL RMMVCFHSTR NIPTMINLME SSRGTRRRGI 480
  481 TVYAMHLVEL SERSSAINMV HKARRNGMPF WNRRRNGDGD QLVVAFETYQ QLSHVSIRAM 540
  541 TAISDLHTIH EDVVTSAHQK RAALIVLPFH KLHQMDGHME SLGDEYQHIN QRVLHHAPCS 600
  601 VGILVDRGLG GAAQVAASDV SYNIVVLFFG GRDDREALSY ATRMVEHPGI ALHVIRFVPE 660
  661 SGGGGANDKA AADDAFLAEF RGKVAGGNDS IRYEERTSRG KADVVEAIKA MGPTNLFLVG 720
  721 QGSPCAPLME PSAECPELGP VGSYLAMPDF STVASVLVMK QYDPTAEHYE LVEEVADTAV 780
  781 DIDTPGPRRG