YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|48825338
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.55
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNNLLNYQLP VANWVENITE WFTTTFSGLF SFLQTIGQAV MSGITNLLLV IPAPLFILLL  60
   61 TVAAFFISKK RPGLTLFTLI GLWFIYNQGL WNDLMNTVTL VLLSSVISII IGVPLGILMA 120
  121 KSSKAQSIIK PILDFMQTMP GFVYLIPAVA FFGIGMVPGV FASVIFALPP TVRFTNLGIR 180
  181 QVPKELVEAS DSFGSTSRQK LFKLELPLAK STIMAGINQT TMLSLSMVVI ASMIGAPGLG 240
  241 RGVLSALQRA QVGNGFVNGV ALVILAIIID RFTQHLNQPN NKKAAGATTQ KSKKRQGLII 300
  301 GAVVVVILGA IGIGSFSSAK ETKRINLSYV EWDTEVASTN VVGEVLKQMG YDVTMTPLDN 360
  361 SIMWKSVSNG ESDAMVSAWL PKTHGSQYAQ YKDQVEDLGA NLTGAKVGLA VPAYMDVNSI 420
  421 DELTDQAGKK IIGIEPGAGV VTAAENTIQK YDNLKDWKVE TSSSGAMTVA LGQAIKKHEP 480
  481 IVVTGWTPHW MFAKYDLKYL EDPENGMGSE EQIHTMVRKG LKEDQPEAYK VLDNFHWSEK 540
  541 DMEKVMLEIN NGKDPQQAAK DWIKENQELV ESWKK

Type	Start	End	Confidence
Cytoplasmic	1	20	0.70
Transmembrane Helix	21	40	0.77
Non-Cytoplasmic	41	46	0.56
Transmembrane Helix	47	67	0.91
Cytoplasmic	68	72	0.79
Transmembrane Helix	73	91	0.87
Non-Cytoplasmic	92	97	0.78
Transmembrane Helix	98	120	0.92
Cytoplasmic	121	140	0.76
Transmembrane Helix	141	167	0.85
Non-Cytoplasmic	168	220	0.69
Transmembrane Helix	221	243	0.83
Cytoplasmic	244	296	0.40
Transmembrane Helix	297	318	0.88
Non-Cytoplasmic	319	575	0.55