YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|48834537
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.81
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSTGTEENAL SGGADSIRDE APPAEPAATS RWAAVQPWLS LIVRVALAGI LGYAGYTKVI  60
   61 VPALSVESVA AYELFGETLN QLIGYTLPLF ELALALLLLA GLATRVTGII SALLMAVFIA 120
  121 GIASAWARGL TIDCGCFGTG GVVDADETTY ALDIARDLGF MALGLFLAIW PRSRYSLDGA 180
  181 LGLYSSSDEE R

Type	Start	End	Confidence
Cytoplasmic	1	39	0.93
Transmembrane Helix	40	60	0.85
Non-Cytoplasmic	61	81	0.88
Transmembrane Helix	82	102	0.89
Cytoplasmic	103	108	0.70
Transmembrane Helix	109	130	0.87
Non-Cytoplasmic	131	151	0.84
Transmembrane Helix	152	170	0.81
Cytoplasmic	171	191	0.84