YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|78195467, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.65
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEPVKKHLTA VLRVGLGALF LYAGVIKIIT PAAFAGSIAN YQVLPYAGNY LVAAILPWVE  60
   61 VICGALLVTG WRARSAAALV ACMNAFFIVL LFSTVVRGLD IDCGCFKQGG EKTTAWTAIF 120
  121 RDTMLLVAAV FVYRRGTK

Type	Start	End	Confidence
Cytoplasmic	1	9	0.96
Transmembrane Helix	10	34	0.82
Non-Cytoplasmic	35	49	0.76
Transmembrane Helix	50	69	0.94
Cytoplasmic	70	76	0.77
Transmembrane Helix	77	96	0.93
Non-Cytoplasmic	97	114	0.85
Transmembrane Helix	115	133	0.86
Cytoplasmic	134	138	0.65