YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|49116007, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.69
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	6	0.83
Transmembrane Helix	7	25	0.84
Non-Cytoplasmic	26	60	0.84
Transmembrane Helix	61	81	0.88
Cytoplasmic	82	95	0.80
Transmembrane Helix	96	116	0.92
Non-Cytoplasmic	117	121	0.74
Transmembrane Helix	122	141	0.76
Cytoplasmic	142	150	0.65
Transmembrane Helix	151	171	0.87
Non-Cytoplasmic	172	177	0.59
Transmembrane Helix	178	195	0.75
Cytoplasmic	196	210	0.61
Transmembrane Helix	211	234	0.92
Non-Cytoplasmic	235	242	0.61
Transmembrane Helix	243	264	0.94
Cytoplasmic	265	283	0.64
Transmembrane Helix	284	303	0.96
Non-Cytoplasmic	304	342	0.69
Transmembrane Helix	343	364	0.92
Cytoplasmic	365	388	0.89
Transmembrane Helix	389	407	0.93
Non-Cytoplasmic	408	420	0.82
Transmembrane Helix	421	444	0.86
Cytoplasmic	445	457	0.80
Transmembrane Helix	458	476	0.94
Non-Cytoplasmic	477	485	0.71
Transmembrane Helix	486	506	0.79
Cytoplasmic	507	521	0.69

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVNKLIVAES LVVFGIVLSI HAVVWDRFSW CTLALAVQAF YVQHKWDRLL QSGGAVFQYR  60
   61 SSANSGLLPA SMIIPLLGIV MRERCKISGN VYFERFGVVV SATGMALAYF LSIIALGITK 120
  121 PFPKNTCILS GVAGSAILYT MKNSLAVSEV IEVLEVLLIF VYLSMILLYL LPRCFTPGEG 180
  181 LLILGGLSFV LNQLIKRSLS SAGGKGDPID YLLLVTLVAL VLVGIIFSIL FVFMDSSSWT 240
  241 SSLFFYMMTA VLALGVFVPW LQYLIRRHPL LWLLEFLVQS HTRLCLLAFW VLLALVACVV 300
  301 VLYQNSKRSP DSKKLQVSTV TRKYFHFLAV ATYIPGLIYD RQLLFVASVV CLAVFILLEY 360
  361 VRYFRIKPFG QTLRNLLTLF LDERDSGPLI LTHIYLLLGM SLPVWLFPRV CSTSLTGSST 420
  421 LLPYAGVLAV GVGDTIASVC GSAMGELRWP GTKKTFEGTM MSIFAQIIAA ALILIFDSSV 480
  481 NLNSGYVWIL GSITLVSLLE AFTTQIDNVI LPLYLHILLM V