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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: NDC1_RAT
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.80
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MATAASGPCA GGSPRDILWR VLGWRIVTSV VWSVLLLPVC ITAFIVFSSI DLFHPIQWLS  60
   61 DSLNEFYSSQ VIFYLLLLAV VIIIISIFNV EFYTVVPSIP GSRLALIARI LHPQQLTHSF 120
  121 IHAVMGMAVA WCAAIMTKGQ SRSLVVPCTG TESLDSPAAQ TCMNEYHLFF LLSGAFMGYS 180
  181 YSLLYFINNM NYLPFPIIQQ YKFLRFRRSL LLLVKHSCVE SLFMVRNFCI VYYFFGHIPK 240
  241 AWISTALDLR TDEQAHRPLD TIGGLLNVSL LYHVWLCGVF LLMTWYISWI LFKIYATEAY 300
  301 MFPVQPPFAE ESDECLPKVL NSNPPLIIKY LALQDLMLLS QYSPSRRQEV FSLSQPGGHP 360
  361 HNWTAISREC LSLLNDMTQK LVLYQEAAAT NGRMYSSYSV EPKRLSSPEE TAFQTPKPSQ 420
  421 MPSVPPLVKT SLFSPKLSTP DGSSPFGTPF GSSVVNRMAG IFDVNTCCGS PQSPQLVRRG 480
  481 PRLWTHTSDQ QVSAVSNPSP CASVTAEGKT VRQPSVLYSW IQNKREQIKN FLSKRVLIMY 540
  541 FFSKHPEASI QAVFSDAQMH IWALEGLSHL VAASFTEDRF GVVQTTLPAI LNTLLTLQEA 600
  601 VDKYFKLPHA SSKPPRTSGS LVDTSYKTLR FAFRASLKTA IYRITTTFGE HLNAVQASAE 660
  661 HQKRLQQFLE FKE

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle