YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|48868563, gi\|...
Protein type:	Globular with Signal Peptide
Type Confidence:	0.78
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPFFTEAPKS LCILRLSAVG DVCHALAVVQ HIQAYYPQTE MTWIVGKTEM GLLSGIPNIT  60
   61 LIPYDKKAGW KGVLLFWKQL KNKQFDALLN MQTAFRASIL SLGIKAKFKI GFGEKRSREG 120
  121 QWLFVNRRIT DPFSPHVLDG FMAFAEYIGV PKSEPKWELA ISQDDDKFAD QFIDFSRKNL 180
  181 LISPCSSKAE KDWLIERYAE IANIAHQHNI NVIFCSSPAK RELEIVEKIT ALCHFTPTNI 240
  241 AGKTNLKQLT ALISKVDLVL SPDSGPAHIA TTQGTPVIGL YAYHNPLRTA PYNNLDNVVS 300
  301 VYEENAQKEF GKPSSELPWA TKLKGKNLMA EIQVEPVIEQ MKKLGLF

Type	Start	End	Confidence
Signal Peptide	1	25	0.78
N-region	1	16
H-region	17	22
C-region	23	25
Cleavage Site	25	26
Non-Cytoplasmic	26	347	0.99