YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|116492226, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.87
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	4	0.96
Transmembrane Helix	5	26	0.89
Cytoplasmic	27	43	0.93
Transmembrane Helix	44	66	0.90
Non-Cytoplasmic	67	74	0.81
Transmembrane Helix	75	95	0.90
Cytoplasmic	96	102	0.82
Transmembrane Helix	103	122	0.88
Non-Cytoplasmic	123	128	0.63
Transmembrane Helix	129	149	0.87
Cytoplasmic	150	160	0.64
Transmembrane Helix	161	181	0.91
Non-Cytoplasmic	182	186	0.78
Transmembrane Helix	187	206	0.94
Cytoplasmic	207	212	0.76
Transmembrane Helix	213	234	0.89
Non-Cytoplasmic	235	239	0.78
Transmembrane Helix	240	262	0.90
Cytoplasmic	263	291	0.89
Transmembrane Helix	292	311	0.93
Non-Cytoplasmic	312	319	0.68
Transmembrane Helix	320	341	0.91
Cytoplasmic	342	386	0.98

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRFEIIVSLF ATMIISAILT PFVRRISFKV GAIDKPTARR VNKVPMPTMG GLAIFIAFNF  60
   61 SLFFLLRNQI PNPQFYGIFF GECIILVTGI IDDIFELRPI QKMIGILLAA LAVYLFANVR 120
  121 MTTLTFPFIG IVNFGWFSLP ITLLWIAAIT NAINLLDGLD GLATGVTIIA LFTTGFTGLF 180
  181 FLPSTNIYIV IMIFTLVAAE IGFLPYNFFP ARIYLGDTGA LFIGFMISIF SLSGLKNATF 240
  241 ITILIPVMIL GVPLTDTVYA ILRRLLNKES ISHADKRHLH HRLMQMGLTH RQTVLVIYGI 300
  301 SLIFSFIALL YPVSTLWGSV LLTIGILIGI EIFVEAIGLV GENRTPMLNW IRKLVRSNTS 360
  361 KVDSNEFKEE NTLKDKVRTR SERHKK