YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|57237776, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.96
Topology Confidence:	0.70
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSLQKKATLV ASLCAIVLAL VKFIVGLTSG SVAVLSSAID SLMDFAISAF NFLALKKSSQ  60
   61 KANENYNFGF SKIEALMGLL EGVFIVGVGI FIFYESILKI YYKEEIKDLN SSIYVMIFAL 120
  121 IMTFFLVLFL NYVAKKTKSL IIESDALHYK TDCLTNACTL GALVLIYFTN LHIIDAIFGI 180
  181 VISLYTAFSA FKIIKKALAF LMDEALPKEQ VDKICTLISN NPEIISYHEL KTRKTPSCNY 240
  241 LSVHLVFCPI ISLLNAHKIS DEIEEGVRKM FENEKWDIQI HLDPYDDAEQ ERQRQ

Type	Start	End	Confidence
Cytoplasmic	1	6	0.94
Transmembrane Helix	7	26	0.87
Non-Cytoplasmic	27	32	0.63
Transmembrane Helix	33	55	0.75
Cytoplasmic	56	74	0.75
Transmembrane Helix	75	94	0.94
Non-Cytoplasmic	95	111	0.71
Transmembrane Helix	112	134	0.91
Cytoplasmic	135	147	0.76
Transmembrane Helix	148	168	0.70
Non-Cytoplasmic	169	172	0.65
Transmembrane Helix	173	194	0.84
Cytoplasmic	195	295	0.89