YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|11347010
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.50
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	10	0.93
Transmembrane Helix	11	31	0.90
Non-Cytoplasmic	32	47	0.83
Transmembrane Helix	48	68	0.89
Cytoplasmic	69	77	0.83
Transmembrane Helix	78	100	0.91
Non-Cytoplasmic	101	472	0.99
Transmembrane Helix	473	490	0.55
Cytoplasmic	491	505	0.51
Transmembrane Helix	506	523	0.50
Non-Cytoplasmic	524	776	0.97
Transmembrane Helix	777	798	0.89
Cytoplasmic	799	804	0.91
Transmembrane Helix	805	829	0.83
Non-Cytoplasmic	830	839	0.76
Transmembrane Helix	840	858	0.90
Cytoplasmic	859	863	0.85
Transmembrane Helix	864	883	0.92
Non-Cytoplasmic	884	907	0.85
Transmembrane Helix	908	932	0.91
Cytoplasmic	933	951	0.97
Transmembrane Helix	952	975	0.89
Non-Cytoplasmic	976	989	0.91
Transmembrane Helix	990	1008	0.93
Cytoplasmic	1009	1015	0.88
Transmembrane Helix	1016	1035	0.91
Non-Cytoplasmic	1036	1054	0.75
Transmembrane Helix	1055	1071	0.96
Cytoplasmic	1072	1081	0.90

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKNIIKSIGD LRVSVVLFLL FALFCALATF IESAYGTPTA WAMVYDTFWF EYIQLLLGIN  60
   61 LLCGMFRYKM FGLKKLPLMI FHISFLFILV GSAMTRYAGF EGILPIREHT QNSLIESSKT 120
  121 SLRISAIKDG ERYSAVNDRY IGNLPFANSF KLKLNLGDDQ AVLKYKDLIL NAHYTYKENN 180
  181 NSDPLLVLML SQKGSQGVDV KFEKGEVKNI EGVNFAFMND NVKAPFVKID ENLTLSSSEN 240
  241 LHFLSMLDGQ NLDLKIGEKA NAKERRLYEI NDISFVVKAA SLHAQEALEG SNRPQDESFW 300
  301 LWFKSAWLEV GRTMLISTFG EPQNWKNSLL LHFKDFALSN ENKNLELTGS NALKLELSYK 360
  361 NESKEFYIFE YNKPIMIELA DQKFFISWAL SYEQLPFDIY LRDFVLDRYP GSMSPASYAS 420
  421 EITVKNNNEN FDYRIFMNNV LDYDGYRFYQ SSYDQDEKGT VLSVNKDPGK IPTYIGYFLL 480
  481 CLGMFMNFLN PHSRFRTLAR LINKDTLKHT SVIIFILLLS FGSEKTFAQD LNSTLPVVNT 540
  541 NHAKALATLI VQKSADGRMV PFDTLSREIL EKIHQSDSYK GQNSNAVMLS MLVDVDKWQL 600
  601 EPFILMPQNQ AVRDAIANIL EIPSAKYIAY KDFFDENNRY KLQKYVENAN RKNPNARGVF 660
  661 DKEIIKLDER ANVVNLVFSG ELFKFIPVQN NPNNVWLAPF SAVTTLKGDE GHIVLALIQN 720
  721 YFSAVENAFK DGNWIRADEG LKFIKEYQEK IGYKVMPSKT KVEMEIFSNK AEIFVKLAPV 780
  781 YLIAGFLLLI LVFSKMVVPN LKISFIFKVV YVLNVLAFVI HTVGLGLRAY LSGHAPWSNG 840
  841 YESMVYIAWA LSLSGIFFSR KSPIALSLTS ILSGVVLMVA HLSEMNPQIT NLVPVLNSYW 900
  901 LSIHVSVITA SYGFLGLCAL LGIFTLFLMC FLKKDGKYNL NILRNITEAT RINEMAMIFG 960
  961 LCLLTVGNFL GAIWANESWG RYWSWDSKET WALVSILVYA AILHLRMIPK YCNQFVFALW1020
 1021 SMFAYWVIIM TYFGVNYFLT GLHSYAAGEA AQIPNYVYWG FALMVVLAFF ARRKRNFVGK1080
 1081 L