YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	PTR19_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.78
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	25	0.94
Transmembrane Helix	26	47	0.84
Non-Cytoplasmic	48	71	0.82
Transmembrane Helix	72	90	0.90
Cytoplasmic	91	96	0.64
Transmembrane Helix	97	118	0.87
Non-Cytoplasmic	119	140	0.86
Transmembrane Helix	141	163	0.83
Cytoplasmic	164	183	0.95
Transmembrane Helix	184	206	0.94
Non-Cytoplasmic	207	213	0.84
Transmembrane Helix	214	233	0.93
Cytoplasmic	234	346	0.95
Transmembrane Helix	347	367	0.80
Non-Cytoplasmic	368	386	0.73
Transmembrane Helix	387	408	0.89
Cytoplasmic	409	424	0.77
Transmembrane Helix	425	447	0.86
Non-Cytoplasmic	448	471	0.79
Transmembrane Helix	472	495	0.85
Cytoplasmic	496	508	0.76
Transmembrane Helix	509	533	0.83
Non-Cytoplasmic	534	552	0.79
Transmembrane Helix	553	572	0.97
Cytoplasmic	573	585	0.78

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEVEEEVSRW EGYADWRNRA AVKGRHGGML AASFVLVVEI LENLAYLANA SNLVLYLREY  60
   61 MHMSPSKSAN DVTNFMGTAF LLALLGGFLS DAFFSTFQIF LISASIEFLG LIILTIQART 120
  121 PSLMPPSCDS PTCEEVSGSK AAMLFVGLYL VALGVGGIKG SLASHGAEQF DESTPKGRKQ 180
  181 RSTFFNYFVF CLACGALVAV TFVVWLEDNK GWEWGFGVST IAIFVSILIF LSGSRFYRNK 240
  241 IPCGSPLTTI LKVLLAASVK CCSSGSSSNA VASMSVSPSN HCVSKGKKEV ESQGELEKPR 300
  301 QEEALPPRAQ LTNSLKVLNG AADEKPVHRL LECTVQQVED VKIVLKMLPI FACTIMLNCC 360
  361 LAQLSTFSVQ QAASMNTKIG SLKIPPASLP IFPVVFIMIL APIYDHLIIP FARKATKTET 420
  421 GVTHLQRIGV GLVLSILAMA VAALVEIKRK GVAKDSGLLD SKETLPVTFL WIALQYLFLG 480
  481 SADLFTLAGL LEYFFTEAPS SMRSLATSLS WASLAMGYYL SSVIVSIVNS ITGSSGNTPW 540
  541 LRGKSINRYK LDYFYWLMCV LSAANFLHYL FWAMRYKYRS TGSRS