YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|30692518, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.66
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTPTNEQDHS CLLVGVYFFG QNIKRGEKMA YIIVGLFGIL GALSRYQFGL IIDRYWHQSF  60
   61 PLATLLINLI GCCLLGWLTT YISRLKILRK EIVTGIGTGF LGAFTTFSTF SVETIKLVNH 120
  121 SEWMLALLYV CISMLGGLLM SGMGYKLGEI QFMRYEMKQN VLQAKGGTES CTEIHALLVA 180
  181 IGGFCGAITR FGISNWFKKR NKTSFPMATF IINITGAFLL GYIVGTGLDK SWQLLVGTGF 240
  241 MGAYTTFSTF KLEAIQLGTN KKWFDFVLYL GATYTIGILF AFVGMYVGKL

Type	Start	End	Confidence
Cytoplasmic	1	28	0.95
Transmembrane Helix	29	49	0.92
Non-Cytoplasmic	50	59	0.80
Transmembrane Helix	60	81	0.92
Cytoplasmic	82	91	0.85
Transmembrane Helix	92	112	0.74
Non-Cytoplasmic	113	124	0.62
Transmembrane Helix	125	147	0.91
Cytoplasmic	148	204	0.67
Transmembrane Helix	205	225	0.93
Non-Cytoplasmic	226	231	0.65
Transmembrane Helix	232	252	0.82
Cytoplasmic	253	265	0.62
Transmembrane Helix	266	287	0.93
Non-Cytoplasmic	288	290	0.66