YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|50417167, gi\|...
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.96
Topology Confidence:	0.83
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKALKVIFML LIICLWMEGG FTKEKSAKKG KKKGKQVYCP SQLSSEDLAR VPANSTSNIL  60
   61 NKLLITYDPR IRPNFKGIPV EDRVNIFINS FGSIQETTMD YRVNIFLRQR WNDPRLRLPQ 120
  121 DFKSDSLTVD PKMFKCLWKP DLFFANEKSA NFHDVTQENI LLFIFRNGDV LISMRLSVTL 180
  181 SCPLDLTLFP MDTQRCKMQL ESFGYTTDDL QFMWQSGDPV QMDEIALPQF DIKQEDIEYG 240
  241 NCTKYYAGTG YYTCVEVIFT LRRQVGFYMM GVYAPTLLIV VLSWLSFWIN PDASAARVPL 300
  301 GILSVLSLSS ECTSLASELP KVSYVKAIDI WLIACLLFGF ASLVEYAVVQ VMLNSPKLLE 360
  361 AERAKIATKE KAEGKTPAKN TINGMGSTPI HVSTLQVTET RCKKVCTSKS DLRTNDFSIV 420
  421 GSLPRDFELS NFDCYGKPIE VGSAFSKSQA KNNKKPPPPK PVIPSAAKRI DLYARALFPF 480
  481 SFLFFNVIYW SVYL

Type	Start	End	Confidence
Signal Peptide	1	22	0.93
N-region	1	13
H-region	14	19
C-region	20	22
Cleavage Site	22	23
Non-Cytoplasmic	23	265	0.96
Transmembrane Helix	266	288	0.92
Cytoplasmic	289	297	0.77
Transmembrane Helix	298	317	0.83
Non-Cytoplasmic	318	326	0.78
Transmembrane Helix	327	349	0.87
Cytoplasmic	350	471	0.95
Transmembrane Helix	472	493	0.86
Non-Cytoplasmic	494	494	0.95