YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|29135323, gi\|...
Protein type:	Globular with Signal Peptide
Type Confidence:	0.96
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTRTSLKKKV FSCCVLIFLL FAIICVWKEK KKGNYYEFLK LQNKEYQVLQ GLEKLAVSSS  60
   61 SQPVSSSSTH NPQRNIQALG GPKAKLKATF QVWDKDSSSK NLAPRLQTIR KNYLNMNKYK 120
  121 VTYKGPGPGV KFSAEALLCH LRDHVNISMI EASDFPFNTS DWEGYLPQED IRSKAGPWGR 180
  181 CAVVSSAGSL KSSRLGREID DHDAVLRFNG APTVKFQQDV GTKTTIRLVN SQLVTTEAGF 240
  241 LKDSLYNEGI LIVWDPSVYH SDIPKWYRNP DYSFFNNFKS YRKLHPDQPF YILKPQMPWE 300
  301 LWDIIQEISS ELIQPNPPSS GMLGIAIMMS LCDQVDIYEF LPSKRKTDVC YYYQRYFDSA 360
  361 CTMGAYHPLL FEKNMVKYLN LGTDEDIYLL GKATLPGFRT IRCGA

Type	Start	End	Confidence
Signal Peptide	1	28	0.94
N-region	1	19
H-region	20	25
C-region	26	28
Cleavage Site	28	29
Non-Cytoplasmic	29	405	0.99