YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|6690638, gi\|2...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.46
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	95	0.94
Transmembrane Helix	96	116	0.79
Non-Cytoplasmic	117	135	0.78
Transmembrane Helix	136	156	0.91
Cytoplasmic	157	165	0.68
Transmembrane Helix	166	184	0.85
Non-Cytoplasmic	185	222	0.71
Transmembrane Helix	223	245	0.87
Cytoplasmic	246	293	0.84
Transmembrane Helix	294	313	0.76
Non-Cytoplasmic	314	333	0.85
Transmembrane Helix	334	355	0.93
Cytoplasmic	356	482	0.98
Transmembrane Helix	483	504	0.94
Non-Cytoplasmic	505	511	0.85
Transmembrane Helix	512	531	0.90
Cytoplasmic	532	545	0.73
Transmembrane Helix	546	566	0.80
Non-Cytoplasmic	567	573	0.55
Transmembrane Helix	574	588	0.47
Cytoplasmic	589	608	0.57
Transmembrane Helix	609	631	0.90
Non-Cytoplasmic	632	683	0.50
Transmembrane Helix	684	709	0.74
Cytoplasmic	710	1139	0.52
Transmembrane Helix	1140	1162	0.85
Non-Cytoplasmic	1163	1210	0.38
Transmembrane Helix	1211	1232	0.87
Cytoplasmic	1233	1274	0.60
Transmembrane Helix	1275	1297	0.85
Non-Cytoplasmic	1298	1343	0.60
Transmembrane Helix	1344	1364	0.59
Cytoplasmic	1365	1387	0.89
Transmembrane Helix	1388	1410	0.95
Non-Cytoplasmic	1411	1467	0.91
Transmembrane Helix	1468	1486	0.92
Cytoplasmic	1487	1497	0.84
Transmembrane Helix	1498	1521	0.86
Non-Cytoplasmic	1522	1537	0.78
Transmembrane Helix	1538	1558	0.79
Cytoplasmic	1559	1586	0.70
Transmembrane Helix	1587	1608	0.86
Non-Cytoplasmic	1609	1631	0.67
Transmembrane Helix	1632	1649	0.46
Cytoplasmic	1650	1673	0.65
Transmembrane Helix	1674	1699	0.87
Non-Cytoplasmic	1700	2331	0.84

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVRFGDELGG RYGGPGGGER ARGGGAGVAG GPGPGGLQPG QRVLYKQSIA QRARTMALYN  60
   61 PIPVKQNCFT VNRSLFVFSE DNVVRKYAKR ITEWPPFEYM ILATIIANCI VLALEQHLPD 120
  121 GDKTPMSERL DDTEPYFIGI FCFEAGIKII ALGFVLHKGS YLRNGWNVMD FVVVLTGILA 180
  181 TAGTDFDLRT LRAVRVLRPL KLVSGIPSLQ VVLKSIMKAM VPLLQIGLLL FFAILMFAII 240
  241 GLEFYMGKFH KACFPNSTDA DPVGDFPCGR EAPARLCEGD TECREYWAGP NFGITNFDNI 300
  301 LFAILTVFQC ITMEGWTDIL YNTNDAAGNT WNWLYFLPLI IIGSFFMLNL VLGVLSGEFA 360
  361 KERERVENRR AFLKLRRQQQ IERELNGYLE WIFKAEEVML AEEDKNAEEK SPLDVLKRAA 420
  421 TKKSRNDLIH AEEGEDRFAD LCAVGSPFAR ASLKSGKTES SSYFRRKEKM FRFFIRRLVK 480
  481 AQSFYWVVLC VVALNTLCVA MVHYQQPQRL TTALYFAEFV FLGLFLTEMS LKMYGLGPRS 540
  541 YFRSSFNCFD FGVIVGSIFE VVWAAIKPGT SFGISVLRAL RLLRIFKVTK YWSSLRNLVV 600
  601 SLLNSMKSII SLLFLLFLFI VVFALLGMQL FGGQFNFQDE TPTTNFDTFP AAILTVFQIL 660
  661 TGEDWNAVMY HGIESQGGVS KGMFSSVYFI VLTLFGNYTL LNVFLAIAVD NLANAQELTK 720
  721 DEEEMEEAAN QKLALQKAKE VAEVSPMSAA NISIAARQQN SAKARSVWEQ RASQLRLQNL 780
  781 RASCEALYSE MDPEERLRFA TSRHLRPDMK THLDRPLVVE PGRDGARGPA GGKARPEGGE 840
  841 AGEGADPPRR HHRHRDRDRD KAAAPAGEPD RADAPKAEGG EPGAREERAR PRRSRSKEAA 900
  901 GPREARSERG RGLGPDGGRR HHRRGSPEEA AEREPRRHRA HRHAPEPSRE GAPGSKGERR 960
  961 ARHRGGSRAG PREAESGEEP SRRHRARHKA PPAHEEAEKE AEAEDRDKEP RNHQPRESHC1020
 1021 DLEASVVIGV GPVHALPSTC LEKVEEQPED ADNQRNVTRM GSQPSDLSTA VRIPVTLTGP1080
 1081 PGETTVVPSG NVDLESQAEG KKEVEADDVM RSGPRPIVPY SSMFCLSPTN LLRRFCHYIV1140
 1141 TMQYFEMVIL VVIALSSIAL AAEDPVQTDS PRNNVLKYMD YIFTGVFTFE MVIKMIDLGL1200
 1201 LLHPGAYFRD LWNILDFIVV SGALVAFAFS GSKGKDISTI KSLRVLRVLR PLKTIKRLPK1260
 1261 LKAVFDCVVN SLKNVLNILI VYMLFMFIFA VIAVQLFKGK FFYCTDESKE LERDCRGQYL1320
 1321 DYEKEEVEAQ PRQWKKYDFH YDNVLWALLT LFTVSTGEGW PMVLKHSVDA TYEEQGPSPG1380
 1381 FRMELSIFYV VYFVVFPFFF VNIFVALIII TFQEQGDKVM SECSLEKNER ACIDFAISAK1440
 1441 PLTRYMPQNK QSFQYKTWTF VVSPPFEYFI MAMIALNTVV LMMKFYDAPY EYELMLKCLN1500
 1501 IVFTSMFSME CVLKVIAFGV LNYFRDAWNV FDFVTVLGSI TDILVTEIAN NFINLSFLRL1560
 1561 FRAARLIKLL RQGYTIRILL WTFVQSFKAL PYVCLLIAML FFIYAIIGMQ VFGNIALDDD1620
 1621 TSINRHNNFR TFLQALMLLF RSATGEAWHE IMLSCLSSRA CDELANATEC GSDFAYFYFV1680
 1681 SFIFLCSFLM LNLFVAVIMD NFEYLTRDSS ILGPHHLDEF IRVWAEYDPA ACGRISYNDM1740
 1741 FEMLKHMSPP LGLGKKCPAR VAYKRLVRMN MPISNDDMTV HFTSTLMALI RTALEIKLAP1800
 1801 AGTKQHQCDA ELRKEISSVW ANLPQKTLDL LVPPHKPDEM TVGKVYAALM IFDFYKQNKT1860
 1861 TRDQIHQAPG GLAQMGPVSL FHPLKATLEQ TQPAVLRGAR VFLRQKSSAS LSNGGAVQTQ1920
 1921 EGGIKESVSW GTQRTQEVPC EVRTPLERGH STEIPVQTGK PAVDVQMQSM VLRGPDGEPQ1980
 1981 PGLESQGRAA SMPRLAAETQ PPPDASPMKR SISTLAPQRP HVAHLCTAAL DRAPASQAAP2040
 2041 PHHHRCHRRR DRKQKSLEKG PGLSADTDGA PYSTAGPGPP PPPGDGAAGC RRERRQERGR2100
 2101 SQERRQPSSS SSEKQRFYSC DRFGGREPPQ PKPSLSSHPT SPTAGQEPGP PRQGSGSVNG2160
 2161 SPLLSTSGAS TPGRGGRRQL PQTPLTPRPS ITYKTANSSP VHFAGAQTSL PAFSPGRLSR2220
 2221 GLSEHNALLQ RDPLSQPLAP SSRIGSDPYL GQRLDSEAAA RTQLEDTLTF EEAVATNSGR2280
 2281 SSRTSYVSSL TSQSHPLRRV PNGYHCTLGL SSGGGGRGRH SYHHPDQDHW C