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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: VGFR1_CHICK
Protein type: Globular with Signal Peptide
Type Confidence: 0.48
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPRQLLSGTV LLGAAFLLAG STSGSKLKVP VLSVNGRQHV VQAGQTLNLT CRGEMLHSWS  60
   61 LPEALSKDSK RLNVTKYACG RNGTQFCSTL TLSRTQANDT GRYSCRYPTS PVKKKRESIV 120
  121 YVFINDTSNP FVEMHSDIPK IIHMTVGKEM IIPCRVTAPN IAVTLKKIPR ETLIPDGKTI 180
  181 IWDNMRGFRI PEATYRFIGL LSCETTIGGH KYSTKYLTHR ETNTIFDIKL STPRLVKLLK 240
  241 GDSLAINCTV KAAWNTRVQM TWTYPGEAMK RGSVTQRIDQ KNREANVFYS ILVIDKVRDI 300
  301 DKGQYACHVK SGPSNKLVNT TVIVYDKRFI NLKRRRKTML EAVAGRKSYR LPMKVKAFPS 360
  361 PEVTWLKDGL PAAEKCARYM VKNYSLIIKD VAEEDAGNYT IILSLRQWNL SKNLTVTLKV 420
  421 NVKPQIYENA VSSFPDPNLY LLSSKQVLTC TVYGIPPPKI TWMWYPCRQN HSKTRRGFCS 480
  481 RTDGSFNLKT GSNIGNRIQS IIERTAIIEG KNKTASTLVV AEAKSSGIYS CVASNKVGKA 540
  541 ERNVSFLVTD VPSGFHISLE KVPIEGENLV LSCSANKFMY KDISWILPRT VTNQTKARKA 600
  601 LNKEYSITLT LTIRNVSLAH SGTYTCRARN IFTGKEVLQK KDVSIRAQEA PALLRQLMDQ 660
  661 TVNTSNSAML ECQVHGIPEP QITWFKNHEE IQQESGIILG PGSRMLFIER VKEEDEGLYQ 720
  721 CIATNLKGSV ESTAYVTVQG TVERSNLELI TLTCTCVAAT LFWLLLTLFI RKLKRPYFSE 780
  781 TKTNHYLSII MDPDEVPLDE QCECLPYDAS KWEIARERLK LGKSLGHGAF GKVVQASAFG 840
  841 IKKSPTCRIV AVKMLKEGAT ASEYKALMTE LKILIHIGHH LNIVNLLGAC TKNGGPLMVI 900
  901 VEYCKYGNLS NYLKSKRNFF SPTKDPSLQG ELMKDKKGIE PVEGKKQRLA SVTSSESFAS 960
  961 SGFQEDKSLS DAEEDEEDAA ELYKLPLTME DLISYSFQVA RGMEFLSSRK CIHRDLAARN1020
 1021 ILLSENNVVK ICDFGLARDI YKNPDYVRKG DARLPLKWMA PESIFDKIYN TKSDVWSYGV1080
 1081 LLWEIFSLGA SPYPGVQIDE DFCSKLKEGT RMRAPEQATE EIYQIMLDCW RSNPNERPWF1140
 1141 SELVKRLGDL LQASVQQEGK DYIPLDTIFT AESGFPPASD PLCNEKFPVP SPNCRSTERA1200
 1201 RYINTFKIKP PQRIKTFEEL PIKEKLVFND YQADSGMVLA SEELKRFTWT GSKQKWTLFG1260
 1261 MKGVSRSKES GLSGITKPRS FCSFSCDQLS ESKRRYTYGN TVLEKMKACH SPPPDYSSVV1320
 1321 HYSQPSI

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle