YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	NSG1_CHICK
Protein type:	Transmembrane
Type Confidence:	0.88
Topology Confidence:	0.67
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVKLGNNFSE KSTKQPLLED GFDTIPLITP LDVNQLQFPP PDKVVVKTKT EYEPDRKKGK  60
   61 FRTPKIAEFT ISITEGVSER FKVTVLVLFA LAFLTCVVFL VVYKVYKYDH TCPEGFVFKN 120
  121 NQCIPAGLEN YYSEQDSNAR GKFYTVINHY NLAKQTITRS VSPWMTVLSE EKLSEQETEA 180
  181 AEKSA

Type	Start	End	Confidence
Cytoplasmic	1	82	0.67
Transmembrane Helix	83	103	0.83
Non-Cytoplasmic	104	185	0.78