YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|47564042, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.94
Topology Confidence:	0.46
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	18	0.55
Transmembrane Helix	19	37	0.46
Non-Cytoplasmic	38	136	0.70
Transmembrane Helix	137	156	0.88
Cytoplasmic	157	164	0.62
Transmembrane Helix	165	183	0.73
Non-Cytoplasmic	184	189	0.68
Transmembrane Helix	190	211	0.85
Cytoplasmic	212	220	0.81
Transmembrane Helix	221	243	0.87
Non-Cytoplasmic	244	248	0.79
Transmembrane Helix	249	269	0.90
Cytoplasmic	270	337	0.95
Transmembrane Helix	338	357	0.93
Non-Cytoplasmic	358	366	0.80
Transmembrane Helix	367	386	0.59
Cytoplasmic	387	396	0.49
Transmembrane Helix	397	416	0.84
Non-Cytoplasmic	417	424	0.45
Transmembrane Helix	425	446	0.76
Cytoplasmic	447	455	0.44
Transmembrane Helix	456	477	0.63
Non-Cytoplasmic	478	484	0.37
Transmembrane Helix	485	505	0.82
Cytoplasmic	506	549	0.50

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAFNDLLLQL GGVGRFQKIQ VTLVILPLIL LASHNTLQNF TAAIPTHHCR PPADTNLSED  60
   61 GDLEAWLPRD GQGRPESCLL FTSPQRGPPF PNGTETNGTG ATEPCPHGWI YDNSTFPSTI 120
  121 VTEWDLVCSH RALRQLAQSL YMMGVLLGAM TFGCLADRLG RQKVLIFNYL QTAVSGTCAA 180
  181 FAPNFPAYCA FRFLSGMSTA GVVLNCMTLN VEWMPIHTRA YVGTLTGYVY SLGQFLLAGM 240
  241 AYAVPHWRYL QLLVSAPFFA FFIYSWFFIE SARWYASSGR LDLTLRNLQR VAWINGKQEE 300
  301 GANLSMEALQ ASLKKELTTG KSQASALELI RCPALRRLFL CLSMLWFATS FAYYGLVMDL 360
  361 QGFGVSIYLI QVIFGAVDLP AKLVSFLVIN NVGRRPAQMA SLLLAGICIL INGVVPKDKS 420
  421 IVRTSLAVLG KGCLASSFNC IFLYTGEVYP TMIRQTGLGM GSTLARVGSI VSPLVSMTAE 480
  481 LYPSVPLFIY GAVPVAASAA IALLPETLGQ PLPDTVQDVE NRRRGKTRKQ QEELQKQMVP 540
  541 LQASAQVKN