YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	COPT1_PIG
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.53
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDHSAHMGMS THMGMSDMNH STTMPPSHHH PTSSGSHESM MMPMTFYFGF KKVEVLFAGL  60
   61 VINTAGEMAG AFVAVFLLAM FYEGLKIARE GLLRKSQVSI RYNSMPVPGP NGTILMETHK 120
  121 TVGQQMLSFP HLLQTVLHII QVVISYFLML IFMTYNGYLC IAVAAGAGTG YFLFSWKKAV 180
  181 VVDITEHCH

Type	Start	End	Confidence
Cytoplasmic	1	51	0.53
Transmembrane Helix	52	66	0.58
Non-Cytoplasmic	67	67	0.14
Transmembrane Helix	68	85	0.74
Cytoplasmic	86	128	0.56
Transmembrane Helix	129	153	0.66
Non-Cytoplasmic	154	154	0.35
Transmembrane Helix	155	175	0.81
Cytoplasmic	176	189	0.63