YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|55240611, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.87
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 RYDDDDDRVW NCGAWFEYIL VVVVSSILLI AASVLTIFWT IYYRKGFNMD DPKLQFNLHP  60
   61 VLMIGGYITL SGFSILLYRI CRCCSHLIVK LCHTFFHACS IPCIVIGFMA VWDSHNQQQI 120
  121 PNFYSLHSWL GMITMGLFAL QFVLGFFSFL ILLCCENATY KFRSTMVPIH ASFGVATFML 180
  181 AIATAVTGLT QKAHFELGEN YSQTVEEGII MNSIGVILTG LGIIIPFAVR RSNSPANCKV 240
  241 YVTERI

Type	Start	End	Confidence
Cytoplasmic	1	17	0.95
Transmembrane Helix	18	41	0.93
Non-Cytoplasmic	42	57	0.93
Transmembrane Helix	58	81	0.87
Cytoplasmic	82	90	0.88
Transmembrane Helix	91	112	0.92
Non-Cytoplasmic	113	131	0.88
Transmembrane Helix	132	154	0.92
Cytoplasmic	155	166	0.88
Transmembrane Helix	167	189	0.90
Non-Cytoplasmic	190	207	0.93
Transmembrane Helix	208	229	0.93
Cytoplasmic	230	246	0.98