YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|52352523
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.84
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	67	0.99
Transmembrane Helix	68	87	0.95
Non-Cytoplasmic	88	120	0.92
Transmembrane Helix	121	140	0.94
Cytoplasmic	141	150	0.83
Transmembrane Helix	151	170	0.95
Non-Cytoplasmic	171	176	0.88
Transmembrane Helix	177	198	0.94
Cytoplasmic	199	207	0.84
Transmembrane Helix	208	228	0.89
Non-Cytoplasmic	229	242	0.78
Transmembrane Helix	243	262	0.94
Cytoplasmic	263	326	0.98
Transmembrane Helix	327	345	0.84
Non-Cytoplasmic	346	365	0.78
Transmembrane Helix	366	387	0.91
Cytoplasmic	388	394	0.94
Transmembrane Helix	395	416	0.93
Non-Cytoplasmic	417	434	0.85
Transmembrane Helix	435	457	0.90
Cytoplasmic	458	469	0.89
Transmembrane Helix	470	492	0.85
Non-Cytoplasmic	493	497	0.77
Transmembrane Helix	498	518	0.92
Cytoplasmic	519	573	0.98

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAFEENNKPV ASEQPQAAED LVSSFSKDSH LSAQSQKYSN DELKAGEANP EGSESVPMEI  60
   61 PKKPMSEYVT VSLLCLCVAF GGFMFGWDTG TISGFVAQTD FLRRFGMKHK DGTHYLSNVR 120
  121 TGLIVAIFNI GCAFGGIILS KAGDMYGRKK GLSIVVSVYI VGIIIQIASI NKWYQYFIGR 180
  181 IISGLGVGGI AVLSPMLISE IAPKHLRGTL VSCYQLMITA GIFLGYCTNY GTKNYSNSVQ 240
  241 WRVPLGLCFA WSLFMIGALT LVPESPRYLC EMNRVEDAKH SIAKSNKVSP EDPAVQAELD 300
  301 LIMAGVEAEK LAGNASWGEL FSTKTKVFQR LLMGVLVQMF QQLTGNNYFF YYGTIVFKSV 360
  361 GLNDSFQTSI VIGVVNFAST FFSLWTVENL GRRKCLLLGA ATMMACMVIF ASVGVTRLYP 420
  421 HGKSQPSSKG AGNCMIVFTC FYIFCYATTW APVAWVITAE SFPLRVKSKC MAMASASNWV 480
  481 WGFLIAFFTP FITSAINFYY GYVFMGCLVA MFFYVFFFVP ETKGLSLEEI QELWEEGVLP 540
  541 WKSEGWIPSS RRGNDYNLED LQHDNKPWYK AML