YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|53733857
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.82
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTLNNTTYDY DDDYEDQLCR KDDVVKFGSI IIPLFFSIVV VMSCIGNVLV LTILALYESL  60
   61 KFLTNVFILN LALSDLLFTF GLPFWASYFI HGWTFGEIGC KAVKFLFYVG FYSSVLFLTL 120
  121 MTIQRYMAVV HPLSDWEKCR CFSVAPIIIW MMSGTAALVG AHYSKILKDL NNTYCEYESI 180
  181 KVKSGIAYFQ NAFFFAAFLI MGFCYCRMLQ TITNARTSKR HKTVRLIFSI ALVFFIGWAP 240
  241 YNIAMFLRSL TDQNIPPFTI CEVSKGVDYA YYLCRLLAFS HCCLNPVFYV FVGVKFRNHL 300
  301 YMILEKILKK KKK

Type	Start	End	Confidence
Non-Cytoplasmic	1	33	0.93
Transmembrane Helix	34	56	0.92
Cytoplasmic	57	65	0.80
Transmembrane Helix	66	86	0.92
Non-Cytoplasmic	87	104	0.81
Transmembrane Helix	105	123	0.92
Cytoplasmic	124	140	0.79
Transmembrane Helix	141	163	0.88
Non-Cytoplasmic	164	186	0.95
Transmembrane Helix	187	209	0.85
Cytoplasmic	210	223	0.90
Transmembrane Helix	224	244	0.90
Non-Cytoplasmic	245	276	0.89
Transmembrane Helix	277	296	0.82
Cytoplasmic	297	313	0.84