YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|53734056
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.87
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEARSTTTTT IVEAKNDVSS HSVRSSKRTM TDDLYSTFSS PMAWILVLAL IITWSAVAII  60
   61 MFDLLDSKGL EGPQPHRVRK TLKEAGSLRG GIHHISPEKA VSEAMDDSSD WITSILTFMT 120
  121 NLVAPEEEED EGERHFVKKK GEFLPPRKKV TEIWAKEMLE EEGEYLEDEE EEEEEEMDTD 180
  181 EEEEDYEEEE EEYDEELEEE EEEEEELEEE EEEELEEEEE KELEEEEEDE EDEEEKEEPG 240
  241 VKVVEEKEEE DEEEAKEEKE KKEEEEDEEE AEAEEEEDEE AATEIAAKEK KKEEAGAKEE 300
  301 DEDEEEGKEE KSEEKEEEEP EAMEEDEEKE EAEKKEKQEA GAEEEDEDEE EAKEMEGDEA 360
  361 ETSKEEAPED EEEKEEEEPE TDKEEAPEDE EGKEEEEDEK EEAASAAPEK KAAPIPAAPK 420
  421 EAEEADEEDD DKDAEAQEEP PAGKVTPAET DETETPIAVT PTTDDDQKDD QIEKKEDDDD 480
  481 VQDAGIAIAL GIVAEVEEQA NAPEAKDTDE VDTEEMAEDI KTLKEEEKDE KKKKK

Type	Start	End	Confidence
Cytoplasmic	1	42	0.87
Transmembrane Helix	43	62	0.90
Non-Cytoplasmic	63	535	0.94