YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|31322662
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.94
Topology Confidence:	0.88
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGLRAVGLLL LVTLLTVPGS XAEVCGEGEY LXEDICCMLC PAGTYVAQHC RIPHSRGKCA  60
   61 SCTEGRDYTA HANGLEECLL CRQCKDDQIT LRTCTVTSDT ECQCHQGYFC PAEGCEICQR 120
  121 CTETCPEGRE IVQICNATMD LGCGLPDQGN KYFAWMIIGI FAAVGFAGLL AFCAIRKCKS 180
  181 AKATLSDKAE RGPXDEDNML LQEVKVIRNN ASHPDNENSG ESPEGQAYND VNSEVKNTSP 240
  241 EENSAVSYER GTIPQKNLWC QTRECWKRIK NYSSSPKNRC NSTLQPNTQC KVSGVRMPAY 300
  301 CMVQKQKYQI SIKDLTQKEA RDCFFAFIKE VPVKKWRKLM RTHLEENDID KIIYNWPNDI 360
  361 DEQSYQMLLM WKNKMGEKQS IIKLLDELWD IDTRAYSNIV HTLTSNNIIG

Type	Start	End	Confidence
Signal Peptide	1	22	0.99
N-region	1	13
H-region	14	19
C-region	20	22
Cleavage Site	22	23
Non-Cytoplasmic	23	152	0.99
Transmembrane Helix	153	175	0.88
Cytoplasmic	176	410	0.94