YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|42519467, gi\|...
Protein type:	Globular with Signal Peptide
Type Confidence:	0.82
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKVRKAVIPA AGLGTRFLPA TKAMPKEMVP IVDKPTIQFI VEEAKKSGIE DILIVTGKNK  60
   61 RSIEDHFDAN PELEQDLEEK GKTELLHLTQ SITNLGVNLY YTRQPHPAGL GDAILRARSF 120
  121 VGDEPFAVML GDDLMEDKVP LTKQLIDRYD KTHASTIAVM PVPHEEVSKY GVIDPDSEIE 180
  181 PGLINVKAFV EKPDVDKAPS DYAIIGRYLL TPEIFDILAH QKPGRGGEIQ LTDAIDTMNK 240
  241 TQRVFAHVFN GERHDVGNKE GYLETSIEYG LSHPQIKDDL REYIINMAQK LQKEDKNSKK 300
  301 K

Type	Start	End	Confidence
Signal Peptide	1	23	0.79
N-region	1	14
H-region	15	20
C-region	21	23
Cleavage Site	23	24
Non-Cytoplasmic	24	301	0.99