YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|238910860
Protein type:	Transmembrane
Type Confidence:	0.98
Topology Confidence:	0.59
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGFIMTAEGH LLFSIASAVF AKNAELTPVL AHGDWWHIIP SAILTCLLPD IDHPKSFLGQ  60
   61 RLKWVSKPIA RAFGHRGFTH SLLAVFALLA TFYLKVPDTW IIPADALQGM VLGYLSHIVA 120
  121 DMLTPAGVPL LWPCRWRFRL PILAPRKGNQ LERFLCMALF AWAVWMPQSM PENNVIRWSS 180
  181 QMITILQMQF NRFINHQID

Type	Start	End	Confidence
Cytoplasmic	1	71	0.59
Transmembrane Helix	72	94	0.88
Non-Cytoplasmic	95	112	0.88
Transmembrane Helix	113	134	0.90
Cytoplasmic	135	150	0.92
Transmembrane Helix	151	169	0.82
Non-Cytoplasmic	170	199	0.81