YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|16765127, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.84
Topology Confidence:	0.56
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNNEETFYQA MRRKGVTRRS FLKFCSLAAT SLGLGAGMTP KIAWALENKP RIPVVWIHGL  60
   61 ECTCCTESFI RSSHPLAKDV ILSLISLDYD DTLMAAAGAQ AEEVFDDITT RYAGKYILAV 120
  121 EGNPPLGEQG MFCISGGRPF IEKLKKAAAG ASAIIAWGNC ASWGCVQAAR PNPTQATPID 180
  181 KVITDKPIVK VPGCPPIPDV MSAIITYMVT FDRLPELDRM GRPLMFYGQR IHDKCYRRAH 240
  241 FDAGEFVESW DDDAARKGYC LYKMGCKGPT TYNACSSTRW NDGVSFPIQS GHGCLGCSEN 300
  301 GFWDRGSFYS RVVDIPQMGT HSTADTVGLT ALGVVAAGVG GHAVASALNQ RKRHKQQLAQ 360
  361 AEQQPDNEDK QA

Type	Start	End	Confidence
Cytoplasmic	1	20	0.79
Transmembrane Helix	21	44	0.73
Non-Cytoplasmic	45	326	0.96
Transmembrane Helix	327	346	0.57
Cytoplasmic	347	372	0.56