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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: lcl|NC_016856.1_...
Protein type: Globular with Signal Peptide
Type Confidence: 0.75
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTLNGKSPVK FVKYLLILAV CCILLGAGSI YGLYRYIEPQ LPDVATLKDV RLQIPMQVYS  60
   61 ADGELIAQYG EKRRIPVTLD QIPPEMINAF IATEDSRFYE HHGIDPVGIF RAASVALFSG 120
  121 HASQGASTIT QQLARNFFLS PERTLMRKIK EAFLAIRIEQ LLNKNEILEL YLNKIYLGYR 180
  181 AYGVGAAAQV YFGKTVDQLS LSEMAVIAGL PKAPSTFNPL YSMDRAIARR NVVLSRMLSE 240
  241 GYITQAQYDQ ARSEPIDANY HAPEIAFSAP YLSEMVRQEM YNRYGESAYE DGYRIYTTIT 300
  301 RKVQQAAQQA VRNNVLDYDM RHGYRGPANV LWKVGETAWD SKKITDTLKA LPTYGPLLPA 360
  361 VVTSANPQEA TAALADGTSV SLHMEGMRWA RPYRSDTQQG PTPRKVTDVV QTGQQIWVRQ 420
  421 VDNDWWLAQV PEVNSALVSL NPQTGAVLAL VGGFDFNQSK FNRATQALRQ VGSNIKPFLY 480
  481 TAAMDKGLTL ASMLNDVPIS RWDAGAGSDW RPKNSPPQYA GPIRLRQGLG QSKNVVMVRA 540
  541 MRAMGVDYAA EYLQRFGFPA QNIVHTESLA LGSASFTPMQ VARGYAVMAN GGFLIDPYFI 600
  601 SKIENDQGGV IFEAKPKIAC PECDIPVIYG NTQKSDVLEN TNVEEVAVSQ EQQNSAVPMP 660
  661 ELEQANQALV AQNGTQEYAP HVINTPLAFL IKSALNTNIF GEPGWMGTGW RAARDLKRRD 720
  721 IGGKTGTTNS SKDAWFSGYG PGVVTSVWIG FDDHRRDLGR TTASGAIKDQ ISGYEGGAKS 780
  781 AQPAWDAYMK AVLEGVPEQP LTPPPGIVTV NIDRSTGQLA SGGNSREEYF IEGTQPTQQA 840
  841 VHEVGTTIID NGETHELF

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle