YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|194445196, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.54
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNRRDAINQI RQFGGRLDRL RKSRGGTGGG RNAPGRQKPT PKPNSRKTNV FNEQVRYAWH  60
   61 GALQDLKSKP LATFLTVMVI AISLTLPSVC YMVYKNVNQA ATQYYPSPQI TVYLQKTLDD 120
  121 DAAARVVGQL QAEQGVEKVN YLSREDALGE FRNWSGFGGA LDMLEENPLP AVAVVIPKLD 180
  181 FQSTASLNTL RDRISQINGI DEVRMDDSWF ARLAALTGLV GRVSAMIGVL MVAAVFLVIG 240
  241 NSVRLSIFAR RDTINVQKLI GATDGFILRP FLYGGALLGF SGAFLSLILS EILVMRLSSA 300
  301 VTEVAQVFGT KFDLNGLSFD ECLLLLLVCS MIGWIAAWLA TVQHLRHFTP D

Type	Start	End	Confidence
Cytoplasmic	1	70	0.75
Transmembrane Helix	71	94	0.64
Non-Cytoplasmic	95	217	0.60
Transmembrane Helix	218	245	0.78
Cytoplasmic	246	265	0.56
Transmembrane Helix	266	290	0.81
Non-Cytoplasmic	291	321	0.51
Transmembrane Helix	322	342	0.91
Cytoplasmic	343	351	0.54